Hi Mark,

I've added the function that a need to the package (in bold), as a copy of
an existing function, bellow, in the KEGGSOAP.R, and then installed the
function successfully, but I got this erro message, when I am installing or
loading the package

Note: Method with signature "PrimitiveSOAPType#list" chosen for function
"resolve",
 target signature "PrimitiveSOAPType#SchemaCollection".
 "SOAPType#SchemaCollection" would also be valid
Note: Method with signature "ArrayType#list" chosen for function "resolve",
 target signature "ArrayType#SchemaCollection".
 "SimpleSequenceType#SchemaCollection" would also be valid
Mensagens de aviso perdidas:
1: Class "VirtualSOAPClass" is defined (with package slot ‘SSOAP’) but no
metadata object found to revise subclass information---not exported?
 Making a copy in package ‘.GlobalEnv’
2: Class "VirtualXMLSchemaClass" is defined (with package slot ‘XMLSchema’)
but no metadata object found to revise subclass information---not exported?
 Making a copy in package ‘.GlobalEnv’

is there sometinhg more that I've to change? Can I redistribute this
package with my own just letting the credits?

*get.reactions.by.compound
function (compound.id)
{
   unlist(.SOAP(KEGGserver, "get_reactions_by_compound", .soapArgs =
list(compound_id = compound.id),
       action = KEGGaction, xmlns = KEGGxmlns, nameSpaces =
SOAPNameSpaces(version = KEGGsoapns)))
}
<environment: namespace:KEGGSOAP>*
*
*get.reactions.by.pathway
function (pathway.id)
{
   unlist(.SOAP(KEGGserver, "get_reactions_by_pathway", .soapArgs =
list(pathway_id = pathway.id),
       action = KEGGaction, xmlns = KEGGxmlns, nameSpaces =
SOAPNameSpaces(version = KEGGsoapns)))
}
<environment: namespace:KEGGSOAP>


On Sat, Mar 3, 2012 at 12:27 AM, Martin Morgan <mtmorgan@fhcrc.org> wrote:
> On 03/02/2012 09:46 AM, Ricardo Silva wrote:
>>
>> Hi,
>> I would like to know if I can have access to zzz.R file of KEGGSOAP.
>
>
> individual package files are available in the 'source' .tar.gz file
> referenced on this page
>
> http://bioconductor.org/packages/release/bioc/html/KEGGSOAP.html
>
> or via svn
>
> http://bioconductor.org/packages/release/bioc/html/KEGGSOAP.html
>
> as described here
>
> http://bioconductor.org/developers/source-control/
>
> KEGGSOAP/R/zzz.R contains the definition of a single function,
> KEGGSOAP:::.onLoad
>
> Martin
>
>>
>> best regards
>>
>> Ricardo
>>
>>
>> _______________________________________________
>> Bioconductor mailing list
>> Bioconductor@r-project.org
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>> Search the archives:
>> http://news.gmane.org/gmane.science.biology.informatics.conductor
>
>
>
> --
> Computational Biology
> Fred Hutchinson Cancer Research Center
> 1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109
>
> Location: M1-B861
> Telephone: 206 667-2793

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