Hi Goseq ers,

I followed the user manual for Goseq and came up with the following plot, I
am working with corn data, so
I imported the lengths from Biomart and manually created the annotation.
Can you please guide me if the Pwf plot is a good fit for my data,
also is there a way to find which of  gene-length and counts to use as
bias.data. The plot is for gene length bias.
I have 1802 DE genes and 28771 nonDE genes in my samples (edgeR output) .
Also if the plotPWF function plots
the pwf values, why only a handful of values can be seen in this plot?
Please pardon my statistical ignorance.

https://docs.google.com/open?id=0B_mk9qnFziV-SHE0LXQ0ZUFUb0dNMEEzN1UwVGhjQQ

Many Thanks,
Al

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