Thanks for the feedback, Dr. Finak. I've provided the outputs for
sessionInfo(), summary(compdat), and traceback().

 

Here is the output of sessionInfo():

 

R version 2.14.1 (2011-12-22)

Platform: x86_64-redhat-linux-gnu (64-bit)

 

locale:

[1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              

 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    

 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   

 [7] LC_PAPER=C                 LC_NAME=C                 

 [9] LC_ADDRESS=C               LC_TELEPHONE=C            

[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

 

attached base packages:

[1] tools     grid      splines   stats     graphics  grDevices utils    

 [8] datasets  methods   base     

 

other attached packages:

[1] flowQ_1.14.1          latticeExtra_0.6-19   RColorBrewer_1.0-5   

 [4] parody_1.12.0         bioDist_1.26.0        KernSmooth_2.23-7    

 [7] outliers_0.14         flowMerge_2.2.0       foreach_1.3.2        

[10] codetools_0.2-8       iterators_1.0.5       snow_0.3-8           

[13] Rgraphviz_1.32.0      graph_1.32.0          flowType_1.0.0       

[16] flowTrans_1.6.0       flowClust_2.12.1      ellipse_0.3-5        

[19] mnormt_1.4-5          flowViz_1.18.0        lattice_0.20-0       

[22] flowMeans_1.6.0       flowStats_1.12.0      cluster_1.14.1       

[25] mvoutlier_1.9.4       robCompositions_1.5.0 car_2.0-12           

[28] nnet_7.3-1            compositions_1.10-2   energy_1.4-0         

[31] MASS_7.3-16           boot_1.3-4            tensorA_0.36         

[34] rgl_0.92.798          fda_2.2.7             zoo_1.7-6            

[37] flowCore_1.20.0       rrcov_1.3-01          pcaPP_1.9-45         

[40] mvtnorm_0.9-9992      robustbase_0.8-0      Biobase_2.14.0       

 

loaded via a namespace (and not attached):

[1] annotate_1.32.1       AnnotationDbi_1.16.11 DBI_0.2-5            

 [4] feature_1.2.8         geneplotter_1.32.1    IRanges_1.12.5       

 [7] ks_1.8.5              RSQLite_0.11.1        sfsmisc_1.0-19       

[10] stats4_2.14.1         xtable_1.6-0         

 

Here is the output of summary(compdat)

 

> summary(compdat)

$`Compensation Controls_0_Unstained Control.fcs`

         FSC-A  FSC-H    SSC-A  SSC-H   FITC-A     PE-A PE-Cy7-A  V450-A

Min.     22440  20030   -133.6     15   -67.32   -88.11   -90.09  -129.6

1st Qu.  73220  54480  38040.0  30560   160.40    59.40    12.87    68.4

Median  103100  78330 192800.0 142500   255.40   115.80    45.54   133.2

Mean    111300  85040 154900.0 117700   277.80   132.30    63.45   197.5

3rd Qu. 137600 109000 251500.0 178100   329.70   167.30    88.11   200.7

Max.    262100 255100 262100.0 256800 47470.00 18800.00 13190.00 51810.0

           APC-A Alexa 700-A QDot 655-A APC-Cy7-A Pac Orange-A   Time

Min.      -56.28      -57.96     -387.9   -115.10        -92.7    0.9

1st Qu.   127.70       10.08      194.4    -11.76        274.5  459.9

Median    615.70       34.44      472.5     14.28        454.5  932.0

Mean      620.90       40.98      510.9     18.88        553.3  943.6

3rd Qu.   915.80       60.48      731.7     42.00        604.8 1390.0

Max.    16950.00     6660.00    29000.0   3879.00     131300.0 2086.0

 

$`Compensation Controls_1_FITC Stained Control.fcs`

         FSC-A  FSC-H    SSC-A  SSC-H   FITC-A      PE-A PE-Cy7-A   V450-A

Min.     21500  20120   -187.1     50   -391.1   -182.20   -84.15   -122.4

1st Qu.  72140  53460  41700.0  33510    180.2     70.29    14.85     90.0

Median  113500  90580 175600.0 130700    266.3    121.80    50.49    156.1

Mean    119700  91690 149200.0 111600   2615.0    473.80    69.82    285.3

3rd Qu. 173500 130600 234000.0 166900    352.4    177.20    93.06    237.6

Max.    262100 255100 262100.0 256800 179500.0 228800.00 23330.00 262100.0

          APC-A Alexa 700-A QDot 655-A APC-Cy7-A Pac Orange-A   Time

Min.     -186.5      -92.40     -370.8   -104.20       -181.8   67.7

1st Qu.   173.9       22.68      220.5     -5.04        302.4  444.6

Median    564.9       48.72      445.5     21.00        487.8  950.6

Mean      614.0       64.29      522.9     29.12        739.1  993.2

3rd Qu.   843.6       80.64      687.8     51.24        669.6 1515.0

Max.    32250.0    11370.00    34180.0   6395.00     262100.0 2051.0

 

$`Compensation Controls_2_PE Stained Control.fcs`

         FSC-A  FSC-H    SSC-A  SSC-H    FITC-A      PE-A PE-Cy7-A    V450-A

Min.     22940  20020    127.7    182    -68.31   -105.90   -89.10   -108.90

1st Qu.  68660  50800  43150.0  34500    180.20     72.27    15.84     87.97

Median  113700  91500 173900.0 130400    252.40    123.80    50.49    148.00

Mean    119000  91440 150200.0 112000    439.40    602.40    89.98    354.50

3rd Qu. 172200 131000 230800.0 164500    323.70    177.20    93.06    215.10

Max.    262100 255100 262100.0 256800 262100.00 262100.00 63440.00 262100.00

           APC-A Alexa 700-A QDot 655-A APC-Cy7-A Pac Orange-A   Time

Min.       -37.8      -78.12     -297.9   -106.70        -77.4    2.3

1st Qu.    174.7       14.28      245.7     -7.56        296.1  589.0

Median     568.7       44.52      466.2     20.16        458.1 1244.0

Mean       658.3       82.72      595.4     36.42        729.6 1262.0

3rd Qu.    835.0       81.48      693.9     50.61        612.0 1905.0

Max.    127100.0    65180.00   190400.0  29760.00     262100.0 2608.0

 

$`Compensation Controls_3_PE-Cy7 Stained Control.fcs`

           FSC-A  FSC-H  SSC-A  SSC-H    FITC-A     PE-A  PE-Cy7-A   V450-A

Min.    -2874000  20060   5497   4909    -40.59   -92.07   -293.00   -110.7

1st Qu.    75670  57080  53390  42090    184.10    77.22     95.04     90.9

Median    106000  82500 198800 148100    255.40   125.70    253.40    154.8

Mean      116000  89860 168900 129600    365.90   197.30    694.50    245.4

3rd Qu.   165100 126700 253800 182300    326.70   174.20    524.90    225.0

Max.      262100 255100 262100 256800 154400.00 90470.00 262100.00 130900.0

            APC-A Alexa 700-A QDot 655-A APC-Cy7-A Pac Orange-A   Time

Min.       -28.56      -57.12     -335.7   -107.50        -87.3   38.0

1st Qu.    197.40       15.12      272.7     -1.68        314.1  420.0

Median     655.60       37.80      531.0     28.56        473.4  936.5

Mean       716.30       57.11      650.4    134.70        660.3  964.9

3rd Qu.    932.40       63.00      763.2     62.16        617.4 1482.0

Max.    122700.00    32030.00   247200.0 122200.00     262100.0 2016.0

 

$`Compensation Controls_4_V450 Stained Control.fcs`

         FSC-A  FSC-H     SSC-A  SSC-H   FITC-A    PE-A PE-Cy7-A  V450-A

Min.     22690  20020    -91.08     13   -53.46 -104.00  -121.80  -130.5

1st Qu.  77500  58050  43490.00  34750   177.20   64.35    15.84   157.5

Median  103100  78780 198700.00 146500   254.40  114.80    50.49   252.0

Mean    110800  85190 161500.00 123200   274.10  124.70    60.86   851.9

3rd Qu. 133600 106100 253500.00 181400   327.70  161.40    92.07   376.2

Max.    262100 255100 262100.00 256800 12860.00 6253.00  3270.00 33160.0

           APC-A Alexa 700-A QDot 655-A APC-Cy7-A Pac Orange-A   Time

Min.      -42.84      -55.44     -327.6    -99.12        -78.3    0.1

1st Qu.   156.20        8.40      236.7    -11.76        383.4  463.5

Median    630.80       29.40      503.1     13.44        537.3 1136.0

Mean      655.60       32.99      548.6     16.26        773.1 1171.0

3rd Qu.   917.30       52.08      749.0     40.32        722.7 1816.0

Max.    37890.00     2163.00    45720.0   1352.00      34480.0 2549.0

 

$`Compensation Controls_5_APC Stained Control.fcs`

         FSC-A  FSC-H  SSC-A  SSC-H   FITC-A    PE-A PE-Cy7-A  V450-A
APC-A

Min.     20240  20020   5228   4612   -53.46 -126.70   -90.09  -139.5
-541.0

1st Qu.  70300  52930  37010  30020   151.50   50.49    12.87    74.7
279.5

Median  102300  78760 188400 140200   230.70  101.00    46.53   143.5
754.3

Mean    110700  84420 152400 115900   248.70  113.20    58.26   181.6
2726.0

3rd Qu. 141300 110400 243800 174800   300.00  149.50    87.12   214.2
1123.0

Max.    262100 255100 262100 256800 12960.00 6089.00  2752.00 19060.0
262100.0

        Alexa 700-A QDot 655-A APC-Cy7-A Pac Orange-A   Time

Min.        -113.40     -419.4   -124.30       -124.2  884.8

1st Qu.       14.28      243.0    -10.92        246.6 1236.0

Median        52.08      528.8     20.16        408.6 1587.0

Mean         510.40      765.0    115.30        482.1 1593.0

3rd Qu.       97.44      794.7     57.96        562.7 1944.0

Max.       73160.00    37700.0  15620.00      27730.0 2321.0

 

$`Compensation Controls_6_Alexa 700 Stained Control.fcs`

           FSC-A  FSC-H    SSC-A  SSC-H   FITC-A     PE-A PE-Cy7-A  V450-A

Min.    -2622000  20020    141.6    120   -67.32  -121.80   -77.22  -121.5

1st Qu.    72730  54960  40080.0  32480   173.20    61.38    22.77    74.7

Median    102100  77940 198800.0 147400   251.50   110.90    61.38   139.5

Mean      109700  84430 160100.0 122300   278.50   126.00    74.92   171.4

3rd Qu.   135400 107500 254700.0 181500   322.70   160.40   102.00   209.7

Max.      262100 255100 262100.0 256800 63190.00 29600.00 15580.00 43060.0

            APC-A Alexa 700-A QDot 655-A APC-Cy7-A Pac Orange-A   Time

Min.       -55.44      -90.72     -389.7   -110.00       -101.7    0.1

1st Qu.    203.30       94.92      234.9     18.48        282.6  461.0

Median     665.30      157.90      506.2     60.48        444.6  956.8

Mean       695.40      702.00      573.8    213.50        524.1  974.9

3rd Qu.    932.40      259.60      760.7    125.20        594.9 1483.0

Max.    134000.00   153800.00   159500.0  93380.00     123600.0 2011.0

 

$`Compensation Controls_7_QDot 655 Stained Control.fcs`

         FSC-A  FSC-H    SSC-A  SSC-H    FITC-A      PE-A PE-Cy7-A   V450-A

Min.     22650  20040   -176.2     17    -47.52   -105.90   -82.17   -131.4

1st Qu.  57470  43840  45760.0  36230    166.30     60.39    17.82     71.1

Median   83440  62800 198700.0 144300    236.60    107.90    51.48    134.1

Mean     96230  73220 163700.0 123100    336.20    168.70    98.69    262.6

3rd Qu. 120200  94580 251500.0 177500    306.90    154.40    91.08    203.4

Max.    262100 255000 262100.0 256800 262100.00 172500.00 56410.00 262100.0

           APC-A Alexa 700-A QDot 655-A APC-Cy7-A Pac Orange-A   Time

Min.       -71.4      -47.88     -641.7    -99.12        -73.8   81.7

1st Qu.    679.6       24.36      879.1     -9.24        269.1  859.6

Median     983.6       47.04     2632.0     15.12        411.3 2204.0

Mean      4198.0      175.30    23880.0     24.77        614.0 2265.0

3rd Qu.   1548.0       78.12    10840.0     43.68        552.6 3623.0

Max.    262100.0    60750.00   262100.0   7120.00     262100.0 4832.0

 

$`Compensation Controls_8_APC-Cy7 Stained Control.fcs`

           FSC-A  FSC-H  SSC-A  SSC-H    FITC-A      PE-A PE-Cy7-A   V450-A

Min.    -3196000  20040   5199   4744    -46.53   -101.00   -80.19   -208.8

1st Qu.    70120  52830  44540  35680    174.20     60.39    18.81     82.8

Median     94710  70700 206200 151400    246.50    108.90    53.46    146.7

Mean      104300  80270 167700 128600    348.30    161.90   120.60    294.3

3rd Qu.   126400 100600 262100 188700    316.80    158.40    97.02    219.6

Max.      262100 255100 262100 256800 220600.00 100300.00 86300.00 262100.0

           APC-A Alexa 700-A QDot 655-A APC-Cy7-A Pac Orange-A   Time

Min.      -432.6      -56.28     -370.8   -239.40        -64.8    0.7

1st Qu.    254.3       10.92      271.8     10.92        285.3  445.3

Median     724.9       32.76      537.3     52.92        429.3  974.1

Mean       859.7       73.50      834.9    545.40        637.8 1017.0

3rd Qu.   1029.0       56.28      785.7    122.60        572.4 1563.0

Max.    262100.0    24640.00   262100.0 262100.00     262100.0 2164.0

 

$`Compensation Controls_9_Pac Orange Stained Control.fcs`

         FSC-A  FSC-H  SSC-A  SSC-H   FITC-A    PE-A PE-Cy7-A   V450-A
APC-A

Min.     22550  20060   5352   4647   -50.49  -94.05   -70.29   -122.4
-26.88

1st Qu.  73900  55310  44820  35960   174.20   61.38    11.88     85.5
162.10

Median  101600  77290 198400 147400   246.50  111.90    44.55    153.0
641.80

Mean    111700  85420 165000 126600   279.10  128.20    58.68    308.4
662.00

3rd Qu. 137100 108100 260100 185800   317.80  159.40    83.16    224.1
938.50

Max.    262100 255100 262100 256800 11950.00 7378.00 10690.00 197800.0
8495.00

        Alexa 700-A QDot 655-A APC-Cy7-A Pac Orange-A   Time

Min.         -61.32     -493.2    -97.44        -64.8    0.5

1st Qu.        6.72      243.7    -11.76        306.0  299.4

Median        26.88      546.8     12.60        483.3  701.1

Mean          32.90      709.5     25.83        998.8  723.9

3rd Qu.       48.72      822.8     40.32        654.3 1133.0

Max.        2895.00    87860.0  12060.00     244400.0 1565.0

 

> print(compdat)

A flowSet with 10 experiments.

 

  column names:

  FSC-A FSC-H SSC-A SSC-H FITC-A PE-A PE-Cy7-A V450-A APC-A Alexa 700-A QDot
655-A APC-Cy7-A Pac Orange-A Time

> summary(compdat)

$`Compensation Controls_0_Unstained Control.fcs`

         FSC-A  FSC-H    SSC-A  SSC-H   FITC-A     PE-A PE-Cy7-A  V450-A

Min.     22440  20030   -133.6     15   -67.32   -88.11   -90.09  -129.6

1st Qu.  73220  54480  38040.0  30560   160.40    59.40    12.87    68.4

Median  103100  78330 192800.0 142500   255.40   115.80    45.54   133.2

Mean    111300  85040 154900.0 117700   277.80   132.30    63.45   197.5

3rd Qu. 137600 109000 251500.0 178100   329.70   167.30    88.11   200.7

Max.    262100 255100 262100.0 256800 47470.00 18800.00 13190.00 51810.0

           APC-A Alexa 700-A QDot 655-A APC-Cy7-A Pac Orange-A   Time

Min.      -56.28      -57.96     -387.9   -115.10        -92.7    0.9

1st Qu.   127.70       10.08      194.4    -11.76        274.5  459.9

Median    615.70       34.44      472.5     14.28        454.5  932.0

Mean      620.90       40.98      510.9     18.88        553.3  943.6

3rd Qu.   915.80       60.48      731.7     42.00        604.8 1390.0

Max.    16950.00     6660.00    29000.0   3879.00     131300.0 2086.0

 

$`Compensation Controls_1_FITC Stained Control.fcs`

         FSC-A  FSC-H    SSC-A  SSC-H   FITC-A      PE-A PE-Cy7-A   V450-A

Min.     21500  20120   -187.1     50   -391.1   -182.20   -84.15   -122.4

1st Qu.  72140  53460  41700.0  33510    180.2     70.29    14.85     90.0

Median  113500  90580 175600.0 130700    266.3    121.80    50.49    156.1

Mean    119700  91690 149200.0 111600   2615.0    473.80    69.82    285.3

3rd Qu. 173500 130600 234000.0 166900    352.4    177.20    93.06    237.6

Max.    262100 255100 262100.0 256800 179500.0 228800.00 23330.00 262100.0

          APC-A Alexa 700-A QDot 655-A APC-Cy7-A Pac Orange-A   Time

Min.     -186.5      -92.40     -370.8   -104.20       -181.8   67.7

1st Qu.   173.9       22.68      220.5     -5.04        302.4  444.6

Median    564.9       48.72      445.5     21.00        487.8  950.6

Mean      614.0       64.29      522.9     29.12        739.1  993.2

3rd Qu.   843.6       80.64      687.8     51.24        669.6 1515.0

Max.    32250.0    11370.00    34180.0   6395.00     262100.0 2051.0

 

$`Compensation Controls_2_PE Stained Control.fcs`

         FSC-A  FSC-H    SSC-A  SSC-H    FITC-A      PE-A PE-Cy7-A    V450-A

Min.     22940  20020    127.7    182    -68.31   -105.90   -89.10   -108.90

1st Qu.  68660  50800  43150.0  34500    180.20     72.27    15.84     87.97

Median  113700  91500 173900.0 130400    252.40    123.80    50.49    148.00

Mean    119000  91440 150200.0 112000    439.40    602.40    89.98    354.50

3rd Qu. 172200 131000 230800.0 164500    323.70    177.20    93.06    215.10

Max.    262100 255100 262100.0 256800 262100.00 262100.00 63440.00 262100.00

           APC-A Alexa 700-A QDot 655-A APC-Cy7-A Pac Orange-A   Time

Min.       -37.8      -78.12     -297.9   -106.70        -77.4    2.3

1st Qu.    174.7       14.28      245.7     -7.56        296.1  589.0

Median     568.7       44.52      466.2     20.16        458.1 1244.0

Mean       658.3       82.72      595.4     36.42        729.6 1262.0

3rd Qu.    835.0       81.48      693.9     50.61        612.0 1905.0

Max.    127100.0    65180.00   190400.0  29760.00     262100.0 2608.0

 

$`Compensation Controls_3_PE-Cy7 Stained Control.fcs`

           FSC-A  FSC-H  SSC-A  SSC-H    FITC-A     PE-A  PE-Cy7-A   V450-A

Min.    -2874000  20060   5497   4909    -40.59   -92.07   -293.00   -110.7

1st Qu.    75670  57080  53390  42090    184.10    77.22     95.04     90.9

Median    106000  82500 198800 148100    255.40   125.70    253.40    154.8

Mean      116000  89860 168900 129600    365.90   197.30    694.50    245.4

3rd Qu.   165100 126700 253800 182300    326.70   174.20    524.90    225.0

Max.      262100 255100 262100 256800 154400.00 90470.00 262100.00 130900.0

            APC-A Alexa 700-A QDot 655-A APC-Cy7-A Pac Orange-A   Time

Min.       -28.56      -57.12     -335.7   -107.50        -87.3   38.0

1st Qu.    197.40       15.12      272.7     -1.68        314.1  420.0

Median     655.60       37.80      531.0     28.56        473.4  936.5

Mean       716.30       57.11      650.4    134.70        660.3  964.9

3rd Qu.    932.40       63.00      763.2     62.16        617.4 1482.0

Max.    122700.00    32030.00   247200.0 122200.00     262100.0 2016.0

 

$`Compensation Controls_4_V450 Stained Control.fcs`

         FSC-A  FSC-H     SSC-A  SSC-H   FITC-A    PE-A PE-Cy7-A  V450-A

Min.     22690  20020    -91.08     13   -53.46 -104.00  -121.80  -130.5

1st Qu.  77500  58050  43490.00  34750   177.20   64.35    15.84   157.5

Median  103100  78780 198700.00 146500   254.40  114.80    50.49   252.0

Mean    110800  85190 161500.00 123200   274.10  124.70    60.86   851.9

3rd Qu. 133600 106100 253500.00 181400   327.70  161.40    92.07   376.2

Max.    262100 255100 262100.00 256800 12860.00 6253.00  3270.00 33160.0

           APC-A Alexa 700-A QDot 655-A APC-Cy7-A Pac Orange-A   Time

Min.      -42.84      -55.44     -327.6    -99.12        -78.3    0.1

1st Qu.   156.20        8.40      236.7    -11.76        383.4  463.5

Median    630.80       29.40      503.1     13.44        537.3 1136.0

Mean      655.60       32.99      548.6     16.26        773.1 1171.0

3rd Qu.   917.30       52.08      749.0     40.32        722.7 1816.0

Max.    37890.00     2163.00    45720.0   1352.00      34480.0 2549.0

 

$`Compensation Controls_5_APC Stained Control.fcs`

         FSC-A  FSC-H  SSC-A  SSC-H   FITC-A    PE-A PE-Cy7-A  V450-A
APC-A

Min.     20240  20020   5228   4612   -53.46 -126.70   -90.09  -139.5
-541.0

1st Qu.  70300  52930  37010  30020   151.50   50.49    12.87    74.7
279.5

Median  102300  78760 188400 140200   230.70  101.00    46.53   143.5
754.3

Mean    110700  84420 152400 115900   248.70  113.20    58.26   181.6
2726.0

3rd Qu. 141300 110400 243800 174800   300.00  149.50    87.12   214.2
1123.0

Max.    262100 255100 262100 256800 12960.00 6089.00  2752.00 19060.0
262100.0

        Alexa 700-A QDot 655-A APC-Cy7-A Pac Orange-A   Time

Min.        -113.40     -419.4   -124.30       -124.2  884.8

1st Qu.       14.28      243.0    -10.92        246.6 1236.0

Median        52.08      528.8     20.16        408.6 1587.0

Mean         510.40      765.0    115.30        482.1 1593.0

3rd Qu.       97.44      794.7     57.96        562.7 1944.0

Max.       73160.00    37700.0  15620.00      27730.0 2321.0

 

$`Compensation Controls_6_Alexa 700 Stained Control.fcs`

           FSC-A  FSC-H    SSC-A  SSC-H   FITC-A     PE-A PE-Cy7-A  V450-A

Min.    -2622000  20020    141.6    120   -67.32  -121.80   -77.22  -121.5

1st Qu.    72730  54960  40080.0  32480   173.20    61.38    22.77    74.7

Median    102100  77940 198800.0 147400   251.50   110.90    61.38   139.5

Mean      109700  84430 160100.0 122300   278.50   126.00    74.92   171.4

3rd Qu.   135400 107500 254700.0 181500   322.70   160.40   102.00   209.7

Max.      262100 255100 262100.0 256800 63190.00 29600.00 15580.00 43060.0

            APC-A Alexa 700-A QDot 655-A APC-Cy7-A Pac Orange-A   Time

Min.       -55.44      -90.72     -389.7   -110.00       -101.7    0.1

1st Qu.    203.30       94.92      234.9     18.48        282.6  461.0

Median     665.30      157.90      506.2     60.48        444.6  956.8

Mean       695.40      702.00      573.8    213.50        524.1  974.9

3rd Qu.    932.40      259.60      760.7    125.20        594.9 1483.0

Max.    134000.00   153800.00   159500.0  93380.00     123600.0 2011.0

 

$`Compensation Controls_7_QDot 655 Stained Control.fcs`

         FSC-A  FSC-H    SSC-A  SSC-H    FITC-A      PE-A PE-Cy7-A   V450-A

Min.     22650  20040   -176.2     17    -47.52   -105.90   -82.17   -131.4

1st Qu.  57470  43840  45760.0  36230    166.30     60.39    17.82     71.1

Median   83440  62800 198700.0 144300    236.60    107.90    51.48    134.1

Mean     96230  73220 163700.0 123100    336.20    168.70    98.69    262.6

3rd Qu. 120200  94580 251500.0 177500    306.90    154.40    91.08    203.4

Max.    262100 255000 262100.0 256800 262100.00 172500.00 56410.00 262100.0

           APC-A Alexa 700-A QDot 655-A APC-Cy7-A Pac Orange-A   Time

Min.       -71.4      -47.88     -641.7    -99.12        -73.8   81.7

1st Qu.    679.6       24.36      879.1     -9.24        269.1  859.6

Median     983.6       47.04     2632.0     15.12        411.3 2204.0

Mean      4198.0      175.30    23880.0     24.77        614.0 2265.0

3rd Qu.   1548.0       78.12    10840.0     43.68        552.6 3623.0

Max.    262100.0    60750.00   262100.0   7120.00     262100.0 4832.0

 

$`Compensation Controls_8_APC-Cy7 Stained Control.fcs`

           FSC-A  FSC-H  SSC-A  SSC-H    FITC-A      PE-A PE-Cy7-A   V450-A

Min.    -3196000  20040   5199   4744    -46.53   -101.00   -80.19   -208.8

1st Qu.    70120  52830  44540  35680    174.20     60.39    18.81     82.8

Median     94710  70700 206200 151400    246.50    108.90    53.46    146.7

Mean      104300  80270 167700 128600    348.30    161.90   120.60    294.3

3rd Qu.   126400 100600 262100 188700    316.80    158.40    97.02    219.6

Max.      262100 255100 262100 256800 220600.00 100300.00 86300.00 262100.0

           APC-A Alexa 700-A QDot 655-A APC-Cy7-A Pac Orange-A   Time

Min.      -432.6      -56.28     -370.8   -239.40        -64.8    0.7

1st Qu.    254.3       10.92      271.8     10.92        285.3  445.3

Median     724.9       32.76      537.3     52.92        429.3  974.1

Mean       859.7       73.50      834.9    545.40        637.8 1017.0

3rd Qu.   1029.0       56.28      785.7    122.60        572.4 1563.0

Max.    262100.0    24640.00   262100.0 262100.00     262100.0 2164.0

 

$`Compensation Controls_9_Pac Orange Stained Control.fcs`

         FSC-A  FSC-H  SSC-A  SSC-H   FITC-A    PE-A PE-Cy7-A   V450-A
APC-A

Min.     22550  20060   5352   4647   -50.49  -94.05   -70.29   -122.4
-26.88

1st Qu.  73900  55310  44820  35960   174.20   61.38    11.88     85.5
162.10

Median  101600  77290 198400 147400   246.50  111.90    44.55    153.0
641.80

Mean    111700  85420 165000 126600   279.10  128.20    58.68    308.4
662.00

3rd Qu. 137100 108100 260100 185800   317.80  159.40    83.16    224.1
938.50

Max.    262100 255100 262100 256800 11950.00 7378.00 10690.00 197800.0
8495.00

        Alexa 700-A QDot 655-A APC-Cy7-A Pac Orange-A   Time

Min.         -61.32     -493.2    -97.44        -64.8    0.5

1st Qu.        6.72      243.7    -11.76        306.0  299.4

Median        26.88      546.8     12.60        483.3  701.1

Mean          32.90      709.5     25.83        998.8  723.9

3rd Qu.       48.72      822.8     40.32        654.3 1133.0

Max.        2895.00    87860.0  12060.00     244400.0 1565.0

 

Finally, here is the output of traceback():

 

3: .local(x, ...)

2: spillover(compdat[, c(1, 3, 5:13)], unstained = sampleNames(compdat)[1], 

       patt = namepatt, fsc = "FSC-A", ssc = "SSC-A", method = "median", 

       useNormFilt = TRUE)

1: spillover(compdat[, c(1, 3, 5:13)], unstained = sampleNames(compdat)[1], 

       patt = namepatt, fsc = "FSC-A", ssc = "SSC-A", method = "median", 

       useNormFilt = TRUE)


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