Hi all,

I`m trying to install some packages like DESeq, GenomicRanges etc with R
2.14.
I am getting error like the following. Same with dependent packages like
RCurl, rtracklayer.
Can someone help me with correct installation instructions here?


>     source("http://www.bioconductor.org/biocLite.R")
>     biocLite("GenomicRanges")
BioC_mirror: 'http://www.bioconductor.org'
Using R version 2.14, BiocInstaller version 1.2.1.
Installing package(s) 'GenomicRanges'
also installing the dependency ‘IRanges’

trying URL '
http://www.bioconductor.org/packages/2.9/bioc/bin/windows/contrib/2.14/IRanges_1.12.5.zip
'
Error in download.file(url, destfile, method, mode = "wb", ...) :
  cannot open URL '
http://www.bioconductor.org/packages/2.9/bioc/bin/windows/contrib/2.14/IRanges_1.12.5.zip
'
In addition: Warning message:
In download.file(url, destfile, method, mode = "wb", ...) :
  cannot open: HTTP status was '404 Not Found'
Warning in download.packages(pkgs, destdir = tmpd, available = available,  :
  download of package ‘IRanges’ failed
trying URL '
http://www.bioconductor.org/packages/2.9/bioc/bin/windows/contrib/2.14/GenomicRanges_1.6.6.zip
'
Error in download.file(url, destfile, method, mode = "wb", ...) :
  cannot open URL '
http://www.bioconductor.org/packages/2.9/bioc/bin/windows/contrib/2.14/GenomicRanges_1.6.6.zip
'
In addition: Warning message:
In download.file(url, destfile, method, mode = "wb", ...) :
  cannot open: HTTP status was '404 Not Found'
Warning in download.packages(pkgs, destdir = tmpd, available = available,  :
  download of package ‘GenomicRanges’ failed



> sessionInfo()
R version 2.14.1 (2011-12-22)
Platform: i386-pc-mingw32/i386 (32-bit)

locale:
[1] LC_COLLATE=English_United States.1252  LC_CTYPE=English_United
States.1252    LC_MONETARY=English_United States.1252 LC_NUMERIC=C

[5] LC_TIME=English_United States.1252

attached base packages:
[1] splines   stats     graphics  grDevices utils     datasets  methods
base

other attached packages:
 [1] Biostrings_2.22.0   locfit_1.5-6        lattice_0.20-0
 akima_0.5-7         DEXSeq_1.0.2        Biobase_2.14.0
 GenomicRanges_1.6.7 IRanges_1.12.6
 [9] edgeR_2.4.3         limma_3.10.2        BiocInstaller_1.2.1

loaded via a namespace (and not attached):
[1] bitops_1.0-4.1 grid_2.14.1    hwriter_1.3    plyr_1.7.1
statmod_1.4.14 stringr_0.6    tools_2.14.1   zlibbioc_1.0.0

Many thanks

	[[alternative HTML version deleted]]

