seconding this, I did not know about Gviz, but with GRanges and rtracklayer
it seems like an obvious choice.
have been playing with ggbio lately as well, very cool but has some issues
with ggplot2 dev (don't we all?  Hadley...)

thank you for the pointers, this is great.


On Thu, Feb 16, 2012 at 2:47 AM, Steve Lianoglou <
mailinglist.honeypot@gmail.com> wrote:

> Hah!
>
> On Thu, Feb 16, 2012 at 1:11 AM, Martin Morgan <mtmorgan@fhcrc.org> wrote:
>
> > http://bioconductor.org/packages/release/bioc/html/ggbio.html
> >
> > and the Gvis vignette (if you're willing to use the 'devel' version of R
> and
> > Bioconductor)
> >
> >  http://bioconductor.org/packages/2.10/bioc/html/Gviz.html
>
> These packages are seriously cool!
>
> -steve
>
> --
> Steve Lianoglou
> Graduate Student: Computational Systems Biology
>  | Memorial Sloan-Kettering Cancer Center
>  | Weill Medical College of Cornell University
> Contact Info: http://cbio.mskcc.org/~lianos/contact
>
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>



-- 
*A model is a lie that helps you see the truth.*
*
*
Howard Skipper<http://cancerres.aacrjournals.org/content/31/9/1173.full.pdf>

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