This can happen from time to time in the devel branch.  One solution is to
obtain the source via svn and install manually.

See http://wiki.fhcrc.org/bioc/SvnHowTo

I have verified that the 1.13.24 will install from source on a linux
platform.

On Mon, Feb 13, 2012 at 6:24 AM, Juan L. Mateo <
juan.mateo@cos.uni-heidelberg.de> wrote:

> Hi all,
>
> I need to install the package htSeqTools from the BioConductor version
> 2.10. This package, among others, requires GenomicRanges, but the
> installation of this last fails because it requires a higher version of
> IRanges than the one in the repository.
>
> The error that I get is below:
>
> ==============================**==============================**=======
> ...
> Error : package 'IRanges' 1.13.22 was found, but >= 1.13.23 is required by
> 'GenomicRanges'
> ERROR: lazy loading failed for package 'GenomicRanges'
> * removing '/bwfs/home/grid/mhbw0366/R/**x86_64-unknown-linux-gnu-**
> library/2.15/GenomicRanges'
>
> The downloaded source packages are in
>    '/tmp/RtmplUtRs3/downloaded_**packages'
> Warning message:
> In install.packages(pkgs = pkgs, repos = repos, ...) :
>  installation of package 'GenomicRanges' had non-zero exit status
> ==============================**==============================**=======
>
>
> sessionInfo()
>
>
> R Under development (unstable) (2012-02-09 r58309)
> Platform: x86_64-unknown-linux-gnu (64-bit)
>
> locale:
>  [1] LC_CTYPE=en_GB       LC_NUMERIC=C         LC_TIME=en_GB
>  [4] LC_COLLATE=en_GB     LC_MONETARY=en_GB    LC_MESSAGES=en_GB
>  [7] LC_PAPER=C           LC_NAME=C            LC_ADDRESS=C
> [10] LC_TELEPHONE=C       LC_MEASUREMENT=en_GB LC_IDENTIFICATION=C
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> other attached packages:
> [1] BiocInstaller_1.3.7
>
> loaded via a namespace (and not attached):
> [1] tools_2.15.0
>
>
>
> --
> =============================
> Juan L. Mateo PhD.
> Centre for Organismal Studies (COS) - University of Heidelberg
> Im Neuenheimer Feld 230
> 69120 Heidelberg, Germany
> Tel: 0049 (0)6221 54 6493
> Fax: 0049 (0)6221 54 5639
>
> --
> =============================
> Juan L. Mateo PhD.
> Centre for Organismal Studies (COS) - University of Heidelberg
> Im Neuenheimer Feld 230
> 69120 Heidelberg, Germany
> Tel: 0049 (0)6221 54 6493
> Fax: 0049 (0)6221 54 5639
>
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>

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