Chlamydomonas.  I was reading a bit more about this ..so I guess what I
might need to do is associate GO ID for each gene in my set and the may be
use GOSeq like packages but I am not sure how should I go about associating
GO ID's to genes.

Thanks!
Abhi

On Fri, Feb 10, 2012 at 12:46 PM, Sean Davis <sdavis2@mail.nih.gov> wrote:

> What organism?
>
> On Fri, Feb 10, 2012 at 2:48 PM, Abhishek Pratap <apratap@lbl.gov> wrote:
> > We have identified a set of genes to be differentially expressed between
> > treatment and control.  The current gene annotation doesnt have
> functional
> > information about the gene.
> >
> > What we would like to do is asses the biological functions of these
> genes(
> > may be based on GO and then cluster them). I was wondering if there is
> > something already out there to do so in semi automated way.
> >
> > I am thinking of blasting them against pfam  or be myhits dbase but
> wanted
> > to take your opinion.
> >
> > PS  : cross posted on biostar mailing list :
> >
> http://biostar.stackexchange.com/questions/17332/functional-assessment-of-genes
> >
> > Thanks!
> > -Abhi
> >
> >        [[alternative HTML version deleted]]
> >
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