This is a rather old version of R.  Please upgrade to 2.14, the current
released version, and if you have further problems, please send the output
of sessionInfo() with your query.

On Tue, Feb 7, 2012 at 3:24 PM, Matthew Pettis <matthew.pettis@gmail.com>wrote:

> Hi,
>
> I installed graphviz from the directions given at:
>
> http://bioconductor.org/packages/release/bioc/html/Rgraphviz.html
>
> which is just to execute these two statements:
> ==============================================================
> source("http://bioconductor.org/biocLite.R")
> biocLite("Rgraphviz")
> ==============================================================
>
> However, I am not able to load the library due to the error below.
> But it seems a strange error... why should this package be trying to
> allocate 3.4Gb of memory?
>
> I am running:
>
> R: 2.12.2
> Graphviz: 2.26.3
>
>
> Thanks for any help.
> Matt
>
>
> Here is the R console output for the getting of the package and trying
> to load the library:
>
>
> This is the output to the R console:
> ==============================================================
> > source("http://bioconductor.org/biocLite.R")
> BioC_mirror = http://bioconductor.org
> Change using chooseBioCmirror().
> > biocLite("Rgraphviz")
> Using R version 2.12.2, biocinstall version 2.7.7.
> Installing Bioconductor version 2.7 packages:
> [1] "Rgraphviz"
> Please wait...
>
> Installing package(s) into ‘C:\Users\U0008998\Documents/R/win-library/2.12’
> (as ‘lib’ is unspecified)
> trying URL '
> http://bioconductor.org/packages/2.7/bioc/bin/windows/contrib/2.12/Rgraphviz_1.28.0.zip
> '
> Content type 'application/zip' length 1065188 bytes (1.0 Mb)
> opened URL
> downloaded 1.0 Mb
>
> package 'Rgraphviz' successfully unpacked and MD5 sums checked
>
> The downloaded packages are in
>        C:\Users\U0008998\AppData\Local\Temp\Rtmpck6fS3\downloaded_packages
> ==============================================================
>
>
> When I try to load the library, I get:
> ==============================================================
> > library('Rgraphviz')
> Error in get(hookname, envir = env, inherits = FALSE) :
>   cannot allocate memory block of size 3.4 Gb
> Error: package/namespace load failed for 'Rgraphviz'
> ==============================================================
>
>
> --
> Do not seek to follow in the footsteps of the wise men of old. Seek
> what they sought.
>
> - Matsuo Munefusa (”Basho”)
> _______________________________________________
> Bioconductor mailing list
> Bioconductor@r-project.org
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives:
> http://news.gmane.org/gmane.science.biology.informatics.conductor
>

	[[alternative HTML version deleted]]

