


Hi,
 
I want to use GEOquery package to get the raw files of a lot GEO datasets at once ( > files <- sapply(mydata$GSE_ID, getGEOSuppFiles) ), but I got the following error message when I did a simple test run. Any suggestion?
 
Thanks a lot!
 
Ying
 
 
> library(GEOquery)
Loading required package: Biobase
Welcome to Bioconductor
  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.
Setting options('download.file.method.GEOquery'='curl')
> files <- getGEOSuppFiles("GSE23720")
[1] "ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/series/GSE23720/"
Error in function (type, msg, asError = TRUE)  : 
  Server denied you to change to the given directory
> sessionInfo()
R version 2.14.1 (2011-12-22)
Platform: x86_64-pc-linux-gnu (64-bit)
locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=C                 LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       
attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     
other attached packages:
[1] GEOquery_2.20.8 Biobase_2.14.0 
loaded via a namespace (and not attached):
[1] RCurl_1.9-5 XML_3.9-4  
> 

 		 	   		   		 	   		  
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