Hi Peter

Thanks for your quick reply. I will try to play with RSEM but for our
current analysis we would also like to use DESeq and may be then compare
results with RSEM. Just wondering if you know the method difference between
RSEM and DEGSeq.

-Abhi
On Wed, Feb 1, 2012 at 3:57 PM, wang peter <wng.peter@gmail.com> wrote:

> u can use RSEM
> http://trinityrnaseq.sourceforge.net/analysis/align_visualize_quantify.html
>
> --
> shan gao
> Room 231(Dr.Fei lab)
> Boyce Thompson Institute
> Cornell University
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