Hi,

Thanks for suggestions. Its working now.

Regards,
Chintan Vora
Sr. Research Associate
Xcelris Labs Ltd.
Old Premchandnagar Road,
Bodakdev, Ahmedabad-380 054 India.
Tel: +91-79-66197777/66311114
Fax: +91-79-66309341
Email: chintan.vora@xcelrislabs.com
Website: www.xcelrisgenomics.com


On 01/25/2012 10:55 AM, Dan Tenenbaum wrote:
> On Tue, Jan 24, 2012 at 8:35 PM, Chintan Vora - Xcelris
> <chintan.vora@xcelrislabs.com>  wrote:
>> I tried it but its gives me following error
>>
>>> library(tcltk)
>> Error : .onLoad failed in loadNamespace() for 'tcltk', details:
>>    call: fun(libname, pkgname)
>>    error: Tcl/Tk support is not available on this system
>> In addition: Warning message:
>> S3 methods ‘$.tclvar’, ‘$<-.tclvar’, ‘as.character.tclObj’,
>> ‘as.character.tclVar’, ‘as.double.tclObj’, ‘as.integer.tclObj’,
>> ‘as.logical.tclObj’, ‘as.raw.tclObj’, ‘print.tclObj’, ‘[[.tclArray’,
>> ‘[[<-.tclArray’, ‘$.tclArray’, ‘$<-.tclArray’, ‘names.tclArray’,
>> ‘names<-.tclArray’, ‘length.tclArray’, ‘length<-.tclArray’, ‘tclObj.tclVar’,
>> ‘tclObj<-.tclVar’, ‘tclvalue.default’, ‘tclvalue.tclObj’, ‘tclvalue.tclVar’,
>> ‘tclvalue<-.default’, ‘tclvalue<-.tclVar’, ‘close.tkProgressBar’ were
>> declared in NAMESPACE but not found
>> Error: package/namespace load failed for ‘tcltk’
>>
> You need to make sure you have the appropriate packages installed on
> your system.
>
> You don't specify which Linux distribution you are running, but here
> is the list of packages for ubuntu (install with "sudo apt-get install
> packageName") courtesy of Hervé Pagès. I should probably make this a
> FAQ. Then reinstall R.
>
> Required stuff:
>   make
>   libc6-dev
>   gfortran
>   gfortran-4.2
>   g++
>   g++-4.2
>   libreadline5-dev
>   libx11-dev
>   libxt-dev
>
> Other highly recommended stuff (TeX/LaTeX, tcltk, PNG, JPEG, cairo, Java):
>   texlive-full
>   tcl8.5-dev
>   tk8.5-dev
>   libxss-dev
>   libpng12-dev
>   libjpeg62-dev
>   libcairo2-dev
>   gcj
>   gcj-4.2
>
> Required by some CRAN or Bioconductor packages:
>   libcurl4-openssl-dev (for RCurl)
>   libxml2-dev (for XML)
>   libgtk2.0-dev, libglade2.0-dev (for RGtk2)
>   libgraphviz-dev (for Rgraphviz)
>   ggobi (for rggobi)
>
> Really nice to have:
>   manpages-dev
>   colorgcc (to activate this: cd /usr/local/bin/&&  sudo ln -s
> /usr/bin/colorgcc gcc)
>
> Dan
>
>
>>> sessionInfo()
>> R version 2.14.1 (2011-12-22)
>> Platform: x86_64-unknown-linux-gnu (64-bit)
>>
>> locale:
>>   [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
>>   [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
>>   [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
>>   [7] LC_PAPER=C                 LC_NAME=C
>>   [9] LC_ADDRESS=C               LC_TELEPHONE=C
>> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
>>
>> attached base packages:
>> [1] stats     graphics  grDevices utils     datasets  methods   base
>>
>> Regards,
>> Chintan Vora
>> Sr. Research Associate
>> Xcelris Labs Ltd.
>> Old Premchandnagar Road,
>> Bodakdev, Ahmedabad-380 054 India.
>> Tel: +91-79-66197777/66311114
>> Fax: +91-79-66309341
>> Email: chintan.vora@xcelrislabs.com
>> Website: www.xcelrisgenomics.com
>>
>>
>> On 01/23/2012 09:48 PM, Dan Tenenbaum wrote:
>>
>> On Mon, Jan 23, 2012 at 3:35 AM, Chintan Vora - Xcelris
>> <chintan.vora@xcelrislabs.com>  wrote:
>>
>> Hi,
>>
>> I am trying to install tcltk package for affylmGUI. But I am getting error
>>
>>   >  library(BiocInstaller)
>> BiocInstaller version 1.2.1, ?biocLite for help
>>   >  biocLite("tcltk")
>> BioC_mirror: 'http://www.bioconductor.org'
>> Using R version 2.14, BiocInstaller version 1.2.1.
>> Installing package(s) 'tcltk'
>> Warning message:
>> In getDependencies(pkgs, dependencies, available, lib) :
>>    package 'tcltk' is not available (for R version 2.14.1)
>>
>>   >  sessionInfo()
>> R version 2.14.1 (2011-12-22)
>> Platform: x86_64-unknown-linux-gnu (64-bit)
>>
>> locale:
>>   [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
>>   [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
>>   [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
>>   [7] LC_PAPER=C                 LC_NAME=C
>>   [9] LC_ADDRESS=C               LC_TELEPHONE=C
>> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
>>
>> attached base packages:
>> [1] stats     graphics  grDevices utils     datasets  methods   base
>>
>> other attached packages:
>> [1] BiocInstaller_1.2.1
>>
>> loaded via a namespace (and not attached):
>> [1] tools_2.14.1
>>
>> tcltk is a built-in package, included with R.
>> You should  not need to install it like this;
>> library(tcltk)
>> should just work.
>> Dan
>>
>>
>> --
>>
>> Regards,
>> Chintan Vora
>> Sr. Research Associate
>> Xcelris Labs Ltd.
>> Old Premchandnagar Road,
>> Bodakdev, Ahmedabad-380 054 India.
>> Tel: +91-79-66197777/66311114
>> Fax: +91-79-66309341
>> Email: chintan.vora@xcelrislabs.com
>> Website: www.xcelrisgenomics.com
>>
>>
>>
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