Hi Bogdan,

There is a package called r3Cseq, could be used for visualization. please
see examples in its vignette.

There is also a package called ggbio, for general visualization of
sequencing data, in the vignette, a function called plotOverview plot
information(GRanges) as segment or rectangle on a stacked genome. which
layout all chromosomes one  by one, and you could arrange your interaction
as a GRanges object, then adding them on the plot as the example shows.
FYI: this part will be generalized into a layout_stacked() in the next
release. If you have any question about it, feel free to sent me email
anytime. thanks.

HTH

Tengfei

On Wed, Jan 25, 2012 at 10:15 AM, Bogdan Tanasa <tanasa@gmail.com> wrote:

> Dear all,
>
> please could you recommend any R package where the
> interchromosomal interactions (by 3C method - chromatin conformation
> capture) could be visualized?
>
> thanks,
>
> Bogdan
>
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-- 
Tengfei Yin
MCDB PhD student
1620 Howe Hall, 2274,
Iowa State University
Ames, IA,50011-2274
Homepage: www.tengfei.name

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