Hi Stephen,

Thanks for supplying the image.  I've made some changes to beadarray and
the latest devel version (2.5.7) now has a processSwathData() function that
can should deal with Illumina data with 3 swaths.

Let me know if you encounter any problems, without access to the scanner
ourselves there always seems to be a new situation that I haven't accounted
for.

Mike

On Wed, Jan 4, 2012 at 1:21 PM, Stephen Edwards <swandle06@yahoo.com> wrote:

> Mike Smith <grimbough@...> writes:
>
> >
> > Dear Stephen,
> >
> > Thank you very much for posting your data, that's a big help.  It would
> be
> > really great if you could include the images too, as I try to use the
> > images as a verification step in breaking the text file down into the
> > component parts.  I won't need an entire chip, but the three swaths from
> > one array section would be great.  I'm afraid I won't get a chance to
> look
> > at this until the new year as I'm on holiday from tomorrow, but I shall
> let
> > you know when I've made processSwathData() more generalisable over the
> > number of swaths.
> >
> > Many thanks
> >
> > Mike Smith
> >
> I too took the holidays off, so I'm just now sending the tiffs.  The new
> file is
> ftp://ftp2.cancerresearchuk.org/pub/beadarray/5719680020tifRetry.tar.bz2.
> The checksum is
> e3282f320d08376b2f3d07d21b03e67e  5719680020tifRetry.tar.bz2
>
> You can ignore 5719680020tif.tar.bz2 as the transfer failed in the middle.
>
> This contains all the tiff files.  If there are any problems with
> the file, I will send one that only contains a single section.
>
> Thanks to you,
> Steve
>
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-- 
Mike Smith
PhD Student
Computational Biology Group
Cambridge University

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