I am trying to install ggbio on a server running 2.14.0 and I am running into issues when it attempts to install some of the dependencies for the ggbio package. Basically it revolves around the NAMESPACE issue for various packages that are dependencies for ggbio, as in the following:

 

** preparing package for lazy loading

Error in library(pkg, character.only = TRUE, logical.return = TRUE, lib.loc = lib.loc) :

  package ābitopsā does not have a NAMESPACE and should be re-installed

ERROR: lazy loading failed for package ārtracklayerā

* removing ā/usr/lib64/R/library/rtracklayerā

ERROR: dependency ārtracklayerā is not available for package āGenomicFeaturesā

* removing ā/usr/lib64/R/library/GenomicFeaturesā

ERROR: dependency ārtracklayerā is not available for package āRsamtoolsā

* removing ā/usr/lib64/R/library/Rsamtoolsā

ERROR: dependencies āGenomicFeaturesā, āRsamtoolsā are not available for package āggbioā

* removing ā/usr/lib64/R/library/ggbioā

 

Not being an R expert, just a systems administrator trying to upgrade and install this package for a researcher, I was wondering if there was an ETA on when ggbio might be updated OR if there are any other ways around this issue?  Should I upgrade to 2.14.1 ??

 

Thank you all in advance

Michael Weiner

Lead Analyst/UNIX Systems Administrator

Lerner Research Institute Computing Services

Lerner Research Institute

Cleveland Clinic


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