Hello.

I have 4 Agilent two-channel arrays that I read in using read.maimages().
I've done normalization and background subtraction. How do I now summarize
the probe information (62976 probes) to gene-level expression values (39430
entrez RNAs, 16251 lincRNAs). I normally did this using rma() or gcrma()
from the affy package when I have Affymetrix data.

Thanks,

Stephen

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