I have a set of protein sequences (from Biomart ENSEMBL Release 62) of Homo
sapiens. On these sequences I have run PFAM-HMMER to find domains on these
sequences. I also have coordinates (coding sequence as well as genomic)for
the exons that make up these proteins. I want to map the protein domains to
these exons. How do I accomplish this in R and Bioconductor? Thanks in
advance for any suggestions.


Regards,

Anupam

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