Hi,

On Mon, Nov 28, 2011 at 8:00 AM, Valerie Obenchain <vobencha@fhcrc.org>wrote:

> Hi kmo,
>
> For the BSgenome, you can follow the "How to forge a BSgenome data
> package" document,
>
>    http://bioconductor.org/**packages/2.10/bioc/html/**BSgenome.html<http://bioconductor.org/packages/2.10/bioc/html/BSgenome.html>
>
> I'm not sure what you mean by "a SNPlocs package for it". The SNPlocs
> packages are all Homo sapiens and created from each dbSNP build. They can
> be found here,
>
>    http://www.bioconductor.org/**packages/release/data/**annotation/<http://www.bioconductor.org/packages/release/data/annotation/>
>
> Are you asking about creating a snp annotation package for a different
> organism?
>
>
Yes how do I include  snp annotation package of a different organism ?
Thanks
kmo

>
>
>
> On 11/26/11 11:03, km wrote:
>
>> Hi all,
>> How do I make a custom BSGenome package for a given genome and SNPlocs
>> package for it ?
>> I appreciate any pointers.
>> Thanks,
>> Regards,
>> kmo
>>
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>

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