hi


i did two color array (agilent 44K two color)  .one sample with two
replicate. which test or algorithm can i use to find differentially
regulated genes in R package.

i have one samples with two techincal replicate:

 1.normal = cy3       treated= Cy5     =   Cy5/Cy3
 2.normal= Cy3       treated = Cy5     =   Cy5/Cy3


thanx

neeraj

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