
Thanks, this seems to have solved the issue for me.

Your help is much appreciated.
John

Date: Thu, 10 Nov 2011 09:34:42 -0500
Subject: Re: [BioC] Rsamtools installation
From: stvjc@channing.harvard.edu
To: bahhab@hotmail.com
CC: bioconductor@r-project.org; jmacdon@med.umich.edu

on second thought my explanation is probably not right -- you have an old biocLite function in your .GlobalEnv.  rm(biocLite) and rm(biocinstallRepos) should remove this and allow proper functioning


On Thu, Nov 10, 2011 at 9:21 AM, Vincent Carey <stvjc@channing.harvard.edu> wrote:

Your problem arises in connection with this:


The following object(s) are masked _by_ ‘.GlobalEnv’:



    biocinstallRepos, biocLite



>     biocLite("ArrayExpressHTS")

Using R version 2.14.0, biocinstall version 2.6.8.

Installing Bioconductor version 2.6 packages:

You have setting of .libPaths() or some environment variable that is preventing use of
the appropriate biocLite function.  A call from 2.14 should not be getting bioc 2.6.





 		 	   		  
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