Thanks a lot Martin, now it works!
Best
Claudia


2011/11/8 Martin Morgan <mtmorgan@fhcrc.org>

> On 11/08/2011 06:50 AM, Claudia Calabrese wrote:
>
>> Hi all!
>> I'm trying to install the 'goseq' package but it returns an error. I'm
>> working with the R version 2.11.1 (2010-05-31).
>> The code is:
>>
>>  source("http://www.**bioconductor.org/biocLite.R<http://www.bioconductor.org/biocLite.R>
>>> ")
>>>
>> BioC_mirror = http://www.bioconductor.org
>> Change using chooseBioCmirror().
>>
>>> bioclite("goseq")
>>>
>> Using R version 2.11.1, biocinstall version 2.6.10.
>> Installing Bioconductor version 2.6 packages:
>> [1] "goseq"
>> Please wait...
>>
>> Warning in install.packages(pkgs= pkgs, repos= repos, ...) :
>>  argument 'lib' is missing: using 'Users/macbookpro/Library/R/2.**
>> 11/library'
>> also installing the dependencies 'BiasedUrn', 'geneLenDataBase'
>>
>> I try with the URL '
>> http://rm.mirror.garr.it/**mirrors/CRAN/bin/macosx/**
>> leopard/contrib/2.11/**BiasedUrn_1.03.tgz<http://rm.mirror.garr.it/mirrors/CRAN/bin/macosx/leopard/contrib/2.11/BiasedUrn_1.03.tgz>
>> '
>> Content type 'application/x-gzip' length 313797 bytes (306kb)
>> Open URL
>> ==============================**====
>> downloaded 306 kb
>>
>
> Hi Claudia -- you might try an alternative Bioconductor
>
>  source("http://bioconductor.**org/biocLite.R<http://bioconductor.org/biocLite.R>
> ")
>  chooseBioCmirror()
>
> or CRAN mirror; the mirror in Dortmund would be a particular good choice.
>
> Martin
>
>
>
>>
>> And so the process freezes at this point..
>>
>> Could be a problem with the R version I use??
>>
>> Thank you in advance
>>
>>
>> Best
>> Claudia
>>
>>
>
> --
> Computational Biology
> Fred Hutchinson Cancer Research Center
> 1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109
>
> Location: M1-B861
> Telephone: 206 667-2793
>



-- 
Claudia

Claudia Calabrese, PhD student
Dip.Scienze Ginecologiche, Ostetriche e Pediatriche
U.O. Genetica Medica - Pad.11
Pol.S.Orsola-Malpighi, via Massarenti 9
40138, Bologna
Tel. +39 051 2088418
Fax. +39 051 2088416

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