Dear list,
I am using the tool VanillaICE in order to find regions of Loss of 
Homozigosity comparing Normal versus Tumor cells.

I cannot understand in the results what "state" indicates and how I have 
to consider the LLR value. The vignette does not give an exhaustive 
explanation.
Could you explain me it or suggest where I can find these info?

Many thanks!
Francesco



-- 

*Francesco Mattia Mancuso*
Bioinformatician

- Bioinformatics Core Facility
- Proteomics Core Facility

CRG-Centre for Genomic Regulation (Room 439)
C/ Dr. Aiguader, 88 (Edif. PRBB)
08003 Barcelona, Spain

Mail: francesco.mancuso@crg.eu <mailto:francesco.mancuso@crg.eu>
Phone: +34 933160202
http://www.crg.es/bioinformatics_unit

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