
Hi

I'm trying to install Rsamtools and getting errors!  I've tried...
     install.packages("/home/ann/downloads/Rsamtools_1.6.0.tar.gz")
and
     biocLite("Rsamtools")
(see below)


Why doesn't  biocLite() install the current version?
I'm almost sure the dependencies are all up-to-date using  install.packages().  
So if it's not an out of date dependent what could the problem be? 
If is it an out of date dependent how do I get R to tell me which one?

Thanks
John


> install.packages("/home/ann/downloads/Rsamtools_1.6.0.tar.gz")
Installing package(s) into ‘/usr/local/lib/R/site-library’
(as ‘lib’ is unspecified)
inferring 'repos = NULL' from the file name
* installing *source* package ‘Rsamtools’ ...
** libs
<snip>
** R
** inst
** preparing package for lazy loading
Error : class "Sequence" is not exported by 'namespace:IRanges'
ERROR: lazy loading failed for package ‘Rsamtools’
* removing ‘/usr/local/lib/R/site-library/Rsamtools’
Warning message:
In install.packages("/home/ann/downloads/Rsamtools_1.6.0.tar.gz") :
  installation of package ‘/home/ann/downloads/Rsamtools_1.6.0.tar.gz’ had non-zero exit status


>  biocLite("Rsamtools")
Using R version 2.14.0, biocinstall version 2.7.7.
Installing Bioconductor version 2.7 packages:
[1] "Rsamtools"
Please wait...

Installing package(s) into ‘/usr/local/lib/R/site-library’
(as ‘lib’ is unspecified)
trying URL 'http://bioconductor.org/packages/2.7/bioc/src/contrib/Rsamtools_1.2.3.tar.gz'
Content type 'application/x-gzip' length 1618555 bytes (1.5 Mb)
opened URL
<snip>
** R
** inst
** preparing package for lazy loading
Error : object ‘normalizePath’ is not exported by 'namespace:utils'
ERROR: lazy loading failed for package ‘Rsamtools’
* removing ‘/usr/local/lib/R/site-library/Rsamtools’

The downloaded packages are in
    ‘/tmp/RtmpkLT1S0/downloaded_packages’
Warning message:
In install.packages(pkgs = pkgs, repos = repos, ...) :
  installation of package ‘Rsamtools’ had non-zero exit status


Many thanks
John


 		 	   		  
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