hi Wendy,

sorry about that, i forgot to say that you need to install in your computer the so-called GNU Scientific Library from:

http://www.gnu.org/s/gsl

this is not part of R and should be installed separately. seeing your output, i guess that you're working on an apple computer. in such a case you can just try the following:

1. download the tarball in your Desktop

http://ftp.gnu.org/gnu/gsl/gsl-1.15.tar.gz


2. open the terminal window from Applications -> Utilities -> Terminal

3. write in the terminal window the following commands

cd Desktop
cd gsl*
./configure
make
make install

if these commands are executed without errors, then you can go back to R and should be able to install GSVA without problems. let me know if you encounter any difficulty with this.

cheers,
robert.



__________________________________________________

>From Wendy Qiao <wendy2.qiao@gmail.com>
Sent Mon 11/7/2011 12:51 PM
To bioconductor@r-project.org
Subject [BioC] problem with using GSVA package


Hi all,

I am trying to use the GSVA package, but I encounter the following problems.

library(GSVA)
Error in dyn.load(file, DLLpath = DLLpath, ...) :
  unable to load shared object
'/Library/Frameworks/R.framework/Versions/2.14/Resources/library/GSVA/libs/x86_64/GSVA.so':

dlopen(/Library/Frameworks/R.framework/Versions/2.14/Resources/library/GSVA/libs/x86_64/GSVA.so,
6): Symbol not found: _gsl_cdf_ugaussian_P
  Referenced from:
/Library/Frameworks/R.framework/Versions/2.14/Resources/library/GSVA/libs/x86_64/GSVA.so
  Expected in: dynamic lookup

Error: package/namespace load failed for ‘GSVA’

I tried to re-install the package and recompile all the packages, but it
still gave the same error. Could anybody please help? Thank you so much!

Wendy

	[[alternative HTML version deleted]]




 __________________________________________________

_______________________________________________
Bioconductor mailing list
Bioconductor@r-project.org (mailto:Bioconductor@r-project.org)
https://stat.ethz.ch/mailman/listinfo/bioconductor (https://stat.ethz.ch/mailman/listinfo/bioconductor)
Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor (http://news.gmane.org/gmane.science.biology.informatics.conductor)


	[[alternative HTML version deleted]]

