---------- Forwarded message ----------
From: wang peter <wng.peter@gmail.com>
Date: Mon, Nov 7, 2011 at 1:25 PM
Subject: the procedure to annotate assembled transcriptom
To: bioc-sig-sequencing@r-project.org


dear all:
        i have some assembled transcriptom without referenced genomes.
i need annotate them based on NCBI nr or swissprot databases.

one choice is use blast, and then write some perl scripts to extract the
annotation

the other one is R package.

so which one is better? i donot know if R can deal with so big databse,like
NCBI nr or swissprot databases.
who have R pipeline or script coding to share with me?
thank you very much

gao shan

	[[alternative HTML version deleted]]

