Hi,

I wonder if it's worth having some sort of "internal equal" overlap mode for
two GRangesLists. This would check not for total equality between e.g. a set
of spliced reads and an exonsBy() GRL but instead only check that the
internal starts and ends are equal and that the query outer start and end
fall inside the subject (indicating a compatible splicing pattern). I have
some pretty inefficient code that filters a "within" overlap result to this,
but it might be nice to have it inside the infrastructure.

Thanks,
Michael

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