Hi,

I'm unable to use the Uniprot Biomart. Are there new settings to connect to
this mart? Thanks!

> require(biomaRt)
> uniprotV <- useMart("unimart", dataset="uniprot")
> d <- getBM(attributes=c("accession", "name"), mart = uniprotV)

Error in getBM(attributes = c("accession", "name"), mart = uniprotV) :
  Query ERROR: caught BioMart::Exception::Query: <pre>Query error occurred
at web service based data source!

Remote data source: http://www.ebi.ac.uk:80/uniprot/biomart/martservice?

Query XML:
&lt;?xml version="1.0" encoding="UTF-8"?&gt;
&lt;!DOCTYPE Query&gt;
&lt;Query  virtualSchemaName = "default" limitStart = "" limitSize = "200"
count = "" softwareVersion = "0.6" requestId= "biomart-client"&gt;
        &lt;Dataset name = "uniprot" interface = "default" &gt;
                                &lt;Attribute name = "accession" /&gt;
                                &lt;Attribute name = "name" /&gt;
          &lt;/Dataset&gt;
&lt;/Query&gt;

Please ensure the above query XML is well-formed and does not contain
illegal characters.

Error message from remote server as below:
Query ERROR: caught BioMart::Exception::Usage: WITHIN Virtual Schema :
default, Dataset uniprot NOT FOUND</pre>


-- 
Kenny Daily
http://www.kennydaily.net/

--- Prediction is very difficult, especially about the future. (Niels Bohr)
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