On Sat, Oct 22, 2011 at 11:03 AM, Martin Morgan <mtmorgan@fhcrc.org> wrote:

> On 10/22/2011 08:33 AM, Michael Lawrence wrote:
>
>> This is what I get:
>>
>>  biocLite("TxDb.Hsapiens.UCSC.**hg19")
>>>
>> Error in if (svnRev<  55733) .stop("R-2.14 r55733 or newer required.") :
>>   missing value where TRUE/FALSE needed
>>
>> My `svn rev` in Rversion() is "unknown". No idea why.  Maybe it's just
>> really old and the computer forgot? Maybe a warning should be issued, and
>> then continue?
>>
>
> Thanks Michael -- this should be fixed in BiocInstaller version 1.1.29;
> because the error is in your installed package, you'll (currently) need to
> remove.packages("**BiocInstaller") before source("http://bioconductor.**
> org/biocLite.R <http://bioconductor.org/biocLite.R>");
> biocLite(character()) or whatever.
>
>
Maybe the biocLite.R script could check for a newer version of
BiocInstaller?


> Martin
>
>
>>  sessionInfo()
>>>
>> R version 2.14.0 Under development (unstable) (--)
>> Platform: i686-pc-linux-gnu (32-bit)
>>
>> locale:
>> [1] C
>>
>> attached base packages:
>> [1] stats     graphics  grDevices utils     datasets  methods   base
>>
>> other attached packages:
>> [1] BiocInstaller_1.1.28 rtracklayer_1.13.19  RCurl_1.5-0
>> [4] bitops_1.0-4.1
>>
>> loaded via a namespace (and not attached):
>> [1] BSgenome_1.21.3      Biostrings_2.21.11   GenomicRanges_1.5.49
>> [4] IRanges_1.11.27      XML_3.2-0            tools_2.14.0
>> [7] zlibbioc_0.1.6
>>
>> Thanks,
>> Michael
>>
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>>
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>
>
> --
> Computational Biology
> Fred Hutchinson Cancer Research Center
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