Hi,

I'm new to my exploration with analysing illumina microarray data using r.
While looking for some example case study (so that I can do my analysis
taking pointers from that/those examples), I am unable to find anything
useful. I would appreciate if you could either provide me with some pointers
in that direction or share your codes that you have done while doing your
illumina analysis.

I am mainly interested in the following: (i) read in the illumina files &
check the quality of the files, (iii) normalization (any type), (iii)
applying Limma and pick the differentially expressed genes.

Thank you.

regards,
Chintanu

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