
Ideas?

> sessionInfo()
R version 2.13.0 (2011-04-13)
Platform: x86_64-redhat-linux-gnu (64-bit)

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
 [5] LC_MONETARY=C              LC_MESSAGES=en_US.UTF-8
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
 [9] LC_ADDRESS=C               LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base



library(oligo)
library(pd.hugene.1.0.st.v1)

exonCELs<- list.celfiles(full.names = TRUE)
affyExonFS<- read.celfiles(exonCELs)
exonCore <- rma(affyExonFS, target = "core")

Leads to this:

Welcome to oligo version 1.16.2
================================================================================
> library(pd.hugene.1.0.st.v1)
Loading required package: RSQLite
Loading required package: DBI
>
> exonCELs<- list.celfiles(full.names = TRUE)
> affyExonFS<- read.celfiles(exonCELs)
Platform design info loaded.
Reading in : ./MD01.CEL
Reading in : ./MD02.CEL
Reading in : ./MD03.CEL
Reading in : ./MD04.CEL
Reading in : ./MD05.CEL
Reading in : ./MD06.CEL
Reading in : ./MD07.CEL
Reading in : ./MD08.CEL
Reading in : ./MD09.CEL
Reading in : ./MD10.CEL
Reading in : ./MD11.CEL
Reading in : ./MD12.CEL
> exonCore <- rma(affyExonFS, target = "core")
Background correcting

 *** caught segfault ***
address 0x2addb000, cause 'memory not mapped'

Traceback:
 1: .Call("rma_c_complete_copy", pmMat, pnVec, nPn, normalize, background,     bgversion, verbose, PACKAGE = "oligo")
 2: basicRMA(pms, pnVec, normalize, background)
 3: .local(object, ...)
 4: rma(affyExonFS, target = "core")
 5: rma(affyExonFS, target = "core")

Possible actions:
1: abort (with core dump, if enabled)
2: normal R exit
3: exit R without saving workspace
4: exit R saving workspace
Selection:




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