Hi,
I'm new to using DESeq and managed to get my data into a CountDataSet object
okay. I can figure out how to generate normalised counts by myself, but when
I try to set the argument to the count accessor function as described in the
documentation, it fails and gives the following message:

> counts( "EC1_2_countDataSet", normalized=TRUE)
Error in counts("EC1_2_countDataSet", normalized = TRUE) :
  unused argument(s) (normalized = TRUE)

If I look at the man page for "counts" it doesn't list any arguments - could
it be that I'm using an obsolete version of DESeq?

cheers
Jane

-- 
Jane Charlesworth PhD
Wellcome Trust Centre for Cell Biology,
Institute of Cell Biology,
School of Biological Sciences,
The University of Edinburgh,
6.33 Swann Building
Mayfield Road
Edinburgh EH9 3JR
Scotland UK.
Email: j <robin.allshire@ed.ac.uk>ane.charlesworth@ed.ac.uk
Tel: 44-(0)131-650-7116

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