Dear Sean,

thanks for your quick reply. BLAT accepts peptides greater than 20 a.a,  so
i was wondering if Bioconductor provides any module to translate genome into
six-frames and then perform a search against the same.

Regards,



On Sun, Sep 25, 2011 at 5:11 PM, Sean Davis <sdavis2@mail.nih.gov> wrote:

> Try blat from UCSC.  You can either use the web interface or download the
> executable.
>
> Sean
>  On Sep 25, 2011 2:30 AM, "Srinivas M. Srikanth" <
> srikanth@ibioinformatics.org> wrote:
> > Hi All,
> >
> > I have several peptide sequences and what to know where they map onto to
> > genome, I was using tblastn suite but results are very very slow. Can
> anyone
> > suggest any module in R which could help solve the problem?
> >
> > Regards,
> >
> >
> > --
> > Srinivas M. Srikanth
> > Ph.D. Student
> > Institute of Bioinformatics
> > Discoverer, 7th Floor,
> > International Technology Park,
> > Bangalore, India
> > Mob:+919019114878
> >
> > [[alternative HTML version deleted]]
> >
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>



-- 
Srinivas M. Srikanth
Ph.D. Student
Institute of Bioinformatics
Discoverer, 7th Floor,
International Technology Park,
Bangalore, India
Mob:+919019114878

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