I had no problem installing this package (not a Bioc package AFAICT) with
biocLite.  My linux system has gfortran

rex-bash-3.2$ gfortran -v
Using built-in specs.
Target: x86_64-redhat-linux
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man
--infodir=/usr/share/info --enable-shared --enable-threads=posix
--enable-checking=release --with-system-zlib --enable-__cxa_atexit
--disable-libunwind-exceptions --enable-libgcj-multifile
--enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk
--disable-dssi --enable-plugin
--with-java-home=/usr/lib/jvm/java-1.4.2-gcj-1.4.2.0/jre --with-cpu=generic
--host=x86_64-redhat-linux
Thread model: posix
gcc version 4.1.2 20080704 (Red Hat 4.1.2-48)

Your g77 doesn't seem up to the task of compiling F90.

On Wed, Sep 21, 2011 at 3:57 AM, Chris Fenton <chrisf@fagmed.uit.no> wrote:

> Trying to automate some of the uni's CGH experiments.
> Have pretty much installed CGHweb.
> Stuck on cghFLasso.
> Anyone seen this error before.
>
> >>>>>>>>>>>>>>>error<<<<<<<<<<<<<<<<<<<<<<<
> Installing package(s) into
> '/home/chrisf/R/x86_64-unknown-linux-gnu-library/2.13'
> (as 'lib' is unspecified)
> trying URL 'http://cran.fhcrc.org/src/contrib/cghFLasso_0.2-1.tar.gz'
> Content type 'application/x-gzip' length 129919 bytes (126 Kb)
> opened URL
> ==================================================
> downloaded 126 Kb
>
> * installing *source* package 'cghFLasso' ...
> ** libs
> gcc -std=gnu99 -I/usr/local/lib64/R/include  -I/usr/local/include
> -fpic  -g -O2 -c L2L1VitExact.c -o L2L1VitExact.o
> g77  -fpic -g -O2 -c  smooth.f90 -o smooth.o
> g77: smooth.f90: linker input file unused because linking not done
> g77 -shared -L/usr/local/lib64 -o cghFLasso.so L2L1VitExact.o smooth.o
> -L/usr/local/lib64/R/lib -lR
> g77: smooth.o: No such file or directory
> make: *** [cghFLasso.so] Error 1
> ERROR: compilation failed for package 'cghFLasso'
> * removing
> '/home/chrisf/R/x86_64-unknown-linux-gnu-library/2.13/cghFLasso'
>
> The downloaded packages are in
>        '/tmp/RtmpoTkkOD/downloaded_packages'
> Warning message:
> In install.packages(pkgs = pkgs, repos = repos, ...) :
>  installation of package 'cghFLasso' had non-zero exit status
>
> >>>>>>>>>>>>>>>>version<<<<<<<<<<<<<<<<<<<
> Using R version 2.13.0, biocinstall version 2.8.4.
>
> platform       x86_64-unknown-linux-gnu
> arch           x86_64
> os             linux-gnu
> system         x86_64, linux-gnu
> status
> major          2
> minor          13.0
> year           2011
> month          04
> day            13
> svn rev        55427
> language       R
> version.string R version 2.13.0 (2011-04-13)
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor@r-project.org
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives:
> http://news.gmane.org/gmane.science.biology.informatics.conductor
>

	[[alternative HTML version deleted]]

