Dear All members,

I am using SPIA package to incorporate the pathway information that related to differentially expressed the genes. However, some organisms such as Drosophila are not included in the package. I downloaded the data but not sure how to incorporate the data to R and process. Can somebody help me ?

I have downloaded the data:

load("/Users/huangji/Downloads/dmeSPIA.RData")

Here is the R scripts for predicting the pathways:

res=spia(de=CH,all=CH1,organism="dme",nB=2000,plots=F,beta=NULL,combine="fisher",verbose=F)

Many THANKS

Jing

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