Is that your real name?

On Thu, Sep 8, 2011 at 12:28 PM, rakhs shit <rakhs2011@gmail.com> wrote:

> Dear All ,
>  I am analyzing the Rna-seq data from one sample. I don't have replicates.
> I
> have different cell lines (6) from one sample and I am interested in
> varying
> genes among different cell lines within the sample. Ideally, I would be
> interested to find differentially expressed genes in all 36 possible
> combinations. I have count data for all cell lines. So whether I should
> analyze by edgeR or DeGseq? Can I perform exact test/GLM on this sort of
> data.
> I am very new to analyze this kind of data and I would appreciate any
> guidance on this regard.
> Best
> Rakhs
>
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>
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