Dear Heidi & list,

I was given the output from an miRNA screening experiment performed on the mouse TaqMan OpenArray microRNA panel from Applied Biosystems (formerly Biotrove). This is a microfluidic card / slide, on which 3 samples can be simultaneously screened for mouse miRNAs.
https://products.appliedbiosystems.com/ab/en/US/adirect/ab?cmd=catNavigate2&catID=608441&tab=DetailInfo

Since I have understood HTqPCR is compatible with most Applied output files, and i read in the vignette that Fluidigm microfluidics data can be imported in HTqPCR, I wondered whether HTqPCR also could be used to import and analyse OpenArray datasets, or whether you (or someone else) could recommend another package for processing.
I do have data available in *.ncx format (also exported as .csv), but i have to admit i don't fully understand the content of all columns...

Regards,
Guido



---------------------------------------------------------
Guido Hooiveld, PhD
Nutrition, Metabolism & Genomics Group
Division of Human Nutrition
Wageningen University
Biotechnion, Bomenweg 2
NL-6703 HD Wageningen
the Netherlands
tel: (+)31 317 485788
fax: (+)31 317 483342
email:      guido.hooiveld@wur.nl
internet:   http://nutrigene.4t.com
http://www.researcherid.com/rid/F-4912-2010


	[[alternative HTML version deleted]]

