n.b. you might also look at the 'snm' package.  it has a nice vignette and
does many, although not all, of the same things.  likewise for
Teschendorff's iSVA package on CRAN.  if you try out the latter, do let
folks know how it goes :-)


On Wed, Aug 17, 2011 at 2:18 PM, Tim Triche, Jr. <tim.triche@gmail.com>wrote:

>
> http://leekgroup.tumblr.com/post/8223377345/at-bioc-2011-awesome-lineup-of-talks-sva-in-bioc
>
> Odd.
> Seems there are two schools of thought on the matter (not unprecedented)
>
> Regardless, until the package *IS* in BioC, it's up to Jeff Leek to support
> it.  He seemed nice enough, why not ask him directly?
>
>
> On Wed, Aug 17, 2011 at 2:02 PM, James W. MacDonald <jmacdon@med.umich.edu
> > wrote:
>
>> Why don't you ask the person who wrote the package? IIRC, this isn't, nor
>> has ever been a BioC package, so why ask here?
>>
>> Best,
>>
>> Jim
>>
>>
>> On 8/17/2011 4:49 PM, Ying Chen wrote:
>>
>>> Hi guys,
>>>
>>> Is there anyone know where I can get the correct sva package for R2.13.1?
>>> I downloaded and installed the zipped sva package from author's website, but
>>> got error message when I tried to launch it.
>>>
>>>  utils:::menuInstallLocal()
>>>>
>>> package 'sva' successfully unpacked and MD5 sums checked
>>>
>>>> library(sva)
>>>>
>>> Error: package 'sva' was built before R 2.10.0: please re-install it
>>>
>>>>
>>>>
>>> Thanks,
>>>
>>> Ying
>>> Confidentiality Note:\ This e-mail, and any attachment t...{{dropped:14}}
>>>
>>> ______________________________**_________________
>>> Bioconductor mailing list
>>> Bioconductor@r-project.org
>>> https://stat.ethz.ch/mailman/**listinfo/bioconductor<https://stat.ethz.ch/mailman/listinfo/bioconductor>
>>> Search the archives: http://news.gmane.org/gmane.**
>>> science.biology.informatics.**conductor<http://news.gmane.org/gmane.science.biology.informatics.conductor>
>>>
>>
>> --
>> James W. MacDonald, M.S.
>> Biostatistician
>> Douglas Lab
>> University of Michigan
>> Department of Human Genetics
>> 5912 Buhl
>> 1241 E. Catherine St.
>> Ann Arbor MI 48109-5618
>> 734-615-7826
>> ************************************************************
>> Electronic Mail is not secure, may not be read every day, and should not
>> be used for urgent or sensitive issues
>> ______________________________**_________________
>> Bioconductor mailing list
>> Bioconductor@r-project.org
>> https://stat.ethz.ch/mailman/**listinfo/bioconductor<https://stat.ethz.ch/mailman/listinfo/bioconductor>
>> Search the archives: http://news.gmane.org/gmane.**
>> science.biology.informatics.**conductor<http://news.gmane.org/gmane.science.biology.informatics.conductor>
>>
>
>
>
> --
> If people do not believe that mathematics is simple, it is only because
> they do not realize how complicated life is.
> John von Neumann<http://www-groups.dcs.st-and.ac.uk/~history/Biographies/Von_Neumann.html>
>
>


-- 
If people do not believe that mathematics is simple, it is only because they
do not realize how complicated life is.
John von Neumann<http://www-groups.dcs.st-and.ac.uk/~history/Biographies/Von_Neumann.html>

	[[alternative HTML version deleted]]

