Excellent, thanks a bunch!

-Jack

On Mon, Aug 15, 2011 at 3:16 PM, James W. MacDonald
<jmacdon@med.umich.edu>wrote:

> An almost identical question was asked and answered today, so I would point
> you to the archives:
>
> https://stat.ethz.ch/**pipermail/bioconductor/2011-**August/040726.html<https://stat.ethz.ch/pipermail/bioconductor/2011-August/040726.html>
>
> Best,
>
> Jim
>
>
>
>
> On 8/15/2011 3:09 PM, Jack Luo wrote:
>
>> I have a bunch of cel files profiled on U133A, U133A2 and U133plus2.
>> Obviously, in order to combine them, I'll only focus on the common probes
>> shared by the 3 different platforms. However, I am not sure what is the
>> correct way of RMA normalizing them. Should cel files from the same
>> platform
>> RMA normalized separately, or they can be RMA normalized by only focusing
>> on
>> the common probe sets?
>>
>> Thanks,
>>
>> -Jack
>>
>>        [[alternative HTML version deleted]]
>>
>> ______________________________**_________________
>> Bioconductor mailing list
>> Bioconductor@r-project.org
>> https://stat.ethz.ch/mailman/**listinfo/bioconductor<https://stat.ethz.ch/mailman/listinfo/bioconductor>
>> Search the archives: http://news.gmane.org/gmane.**
>> science.biology.informatics.**conductor<http://news.gmane.org/gmane.science.biology.informatics.conductor>
>>
>
> --
> James W. MacDonald, M.S.
> Biostatistician
> Douglas Lab
> University of Michigan
> Department of Human Genetics
> 5912 Buhl
> 1241 E. Catherine St.
> Ann Arbor MI 48109-5618
> 734-615-7826
> ************************************************************
> Electronic Mail is not secure, may not be read every day, and should not be
> used for urgent or sensitive issues
>

	[[alternative HTML version deleted]]

