Dear users,

Has anyone applied weighted gene co-expression network analysis in a RNA-seq dataset?  Would the results be reliable? (I'm not questioning the credibility of WGCNA package)

I remember the correlation of genes being discussed in this list before. If I understood correctly, clustering genes using RNA-seq data was not a well accepted practice. However, I have seen a paper using self-organizing map (SOM) algorithm to cluster genes from RNA-seq data.

Any commentary or suggestion will be welcome.

Thanks in advance
Best regards,
Fernando





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