 Dear list, 

 I am working with yeast genome "Saccharomyces cerevisiae".

 My sequences are aligned to reference genome of version "sacCer2". 
 I found the ensembl annotation of genes has 3 versions, including SGD1.01, EF2, and EF3.

I would like to use same coordinate system for aligned reads and annotated genes. 

 Could anyone explain how to match the two different systems (i.e. sacCer1/sacCer2 vs SGD1/SGD2/EF3)? 

Thanks!
Xuekui

-- 
Xuekui Zhang, PhD Candidate
Department of Statistics
333-6356 Agricultural Road
University of British Columbia
Vancouver, BC, V6T 1Z2
Phone: 604-822-2924
Fax: 604-822-6960
https://www.stat.ubc.ca/People/Home/index.php?person=xzhang


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