Hi,

I am getting an error message, when running the transcriptDB command from
UCSC

dm3KG <- makeTranscriptDbFromUCSC(genome="dm3",
tablename="knownGene")Error in tableNames(ucscTableQuery(session,
track = track)) :
  error in evaluating the argument 'object' in selecting a method for
function 'tableNames': Error in normArgTrack(track, trackids) :
Unknown track: UCSC Genes

I checked the tables supported by UCSC, The table is there:

> supportedUCSCtables()                                 track           subtrack
knownGene                   UCSC Genes               <NA>
knownGeneOld3           Old UCSC Genes               <NA>
wgEncodeGencodeManualV3  Gencode Genes    Genecode Manual


Doing the same with the ensembl table works perfectly fine.

Does anyone has an Idea as to why this is happening?

Thanks
Assa

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