Dear members,

I was wondering if anyone can recommend software for aligning endogenous
microRNAs (from mirBASE) with a custom mRNA sequence our lab recently
received. I looked into the microRNA package, but it only allows for perfect
alignment, which I believe is limited to prokaryotes?

Thank you in advanced!
Jason

-- 
Jason Shoemaker, Ph D
Japanese Science and Technology Agency
Infection Induced Host Response Laboratory
The Institute of Medical Science,
University of Tokyo

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