Dear List
Please someone could give to me details about how the splice index is
calculated in oneChannelGUi?
I'm checking some of the splice indexes calculated by this package (on exon
arrays from 11 tissues available on affymetrix web site). But it seems to me
that the splice indexes doesn't correspond to the output of the formula :
log2 (expr exon probeset/expr transcript).

For example:

exon probeset 3832332 expr (in one tissue)                    2.55863
transcript cluster ID 3832322 expr(in the same tissue)   4.47946
splice index (computed by oneChannel)                           -1.92083
splice index (computed with the formula previously reported)   -0.24321

where i'm doing wrong?
Thank you very much for any kind of help
Frank

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