Thanks Gordon

I changed the old file reference and made some minor changes in the code.
Now, everything is working fine.

Best,

Marcus


On Thu, Jun 23, 2011 at 03:09, Gordon K Smyth <smyth@wehi.edu.au> wrote:

> Hi Marcus,
>
> The file you want is called "genelist.txt".  You can use this in place of
> "091701RikenUpdatev3.txt".  This is a simplified version of the complete
> probe annotation file "091701RikenUpdatev3.txt", in which the gene
> identifiers are removed, because I didn't have permission to make the
> complete data publicly available.  The "spottypes.txt" is also slighltly
> different from that used in the limma User's Guide.  Sorry for the
> confusion.
>
> Best wishes
> Gordon
>
>  Date: Mon, 20 Jun 2011 19:50:01 -0400
>> From: Marcus Nunes <marcus.nunes@gmail.com>
>> To: Bioconductor <bioconductor@r-project.org>
>> Subject: [BioC] Help with the weaver example from limma package
>> Content-Type: text/plain
>>
>> Hello all
>>
>> I'm trying to figure out how to mimic the example given in Weaver Mutant
>> Data: A 2x2 Factorial Experiment with Two-Color Data (page 81 of this
>> manual:
>> http://bioconductor.org/**packages/2.6/bioc/vignettes/**
>> limma/inst/doc/usersguide.pdf<http://bioconductor.org/packages/2.6/bioc/vignettes/limma/inst/doc/usersguide.pdf>
>> )
>>
>> There is a line of code, in page 82, that says
>>
>>  Annotation <- read.delim("**091701RikenUpdatev3.txt", header = TRUE,
>>>
>> comment.char="",
>> + quote="\"", as.is = TRUE, check.names=FALSE
>>
>> I downloaded the dataset available at
>> http://bioinf.wehi.edu.au/**limma/data/weaver.zip<http://bioinf.wehi.edu.au/limma/data/weaver.zip>and I can't find this
>> file 091701RikenUpdatev3.txt. I already searched the internet and I
>> couldn't
>> figure out what I have to do. I'll be very glad if you know how to help
>> me.
>>
>> Thanks
>> --
>> Marcus Nunes
>>
>
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