Thanks for quick reply

On Tue, Jun 21, 2011 at 6:55 PM, Yong Li <yong.li@zbsa.uni-freiburg.de>wrote:

> Hello Sean,
>
> the the Agi4x44Preprocess package is only for one color Agilent arrays. I
> also think the limma package is the right choice as it should do the job for
> two color Agilent arrays.
>
> Best regards,
> Yong
>
> Sean Davis wrote:
>
>> On Tue, Jun 21, 2011 at 6:28 AM, Srikanth Manda Srinivas
>> <srikanth@ibioinformatics.org> wrote:
>>
>>> Hi Everyone,
>>>
>>> I would like to know if we have specific package to work with Agilent
>>> 4X44k
>>> array just like Affy. Please guide me how one go for generating HeatMaps
>>> and
>>> other analysis on this data. I am a newbie in this area.
>>>
>>
>> Take a look at the Agi4x44Preprocess package.  If you are new to
>> microarray data analysis using bioconductor, take a look at the limma
>> package and its documentation, particularly the user guide.
>>
>> Sean
>>
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Srikanth Manda Srinivas
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