Thanks Achilleas,

But what if the data I got is segmented already, how could I skip segmentation step and using CGHcall directly?

Many thanks

Yan



From: Achilleas Pitsillides [mailto:anp4r@virginia.edu]
Sent: 26 May 2011 18:57
To: Yan Jiao; bioconductor@r-project.org
Subject: Re: [BioC] CGHcall


Hi,
I think there is a typo in the guide (The error just says that there is no such function loaded). The correct command would have been
make_cghRaw
cheers,
Achilleas
On Thu, May 26, 2011 at 11:34 AM, Sean Davis <sdavis2@mail.nih.gov<mailto:sdavis2@mail.nih.gov>> wrote:
Hi, Yan.

You'll need to provide the output of sessionInfo().

Sean

On Thu, May 26, 2011 at 11:03 AM, Yan Jiao <y.jiao@ucl.ac.uk<mailto:y.jiao@ucl.ac.uk>> wrote:
> Dear All,
>
> I'm trying to run the examples given by CGHcall manual:
>
> # create an instance of cghCall
> new("cghCall")
> # create an instance of cghCall through \code{\link{ExpandCGHcall}}
> ## Not run:
> data(Wilting)
> rawcgh <- make_cghSeg(Wilting)
> normalized <- normalize(rawcgh)
>
>
> but I got error: could not find function "make_cghSeg"
>
> any ideas?
>
> Where can I get a example data set that run through the code?
>
> yan
>
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>
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