Hi Wolfgang,

I dont know why but it is working now. I was doing some mistake that I
cannot replicate again...sorry if it was an inconvenient false alarm.

Best regards,
On Thu, May 19, 2011 at 7:13 PM, Wolfgang Huber <whuber@embl.de> wrote:

> Dear João
>
> can you (perhaps privately, or on a public filesharing place) make
> available to objects 'c' and 'group' so we can test this?
>
>        Best wishes
>        Wolfgang
>
>
> João Barbosa scripsit 05/18/2011 05:16 PM:
>
>> Hi,
>>
>> Does anyone suspect why I'm getting this error?
>>
>> Thanks,
>>
>>
>>  dim(c)
>>>
>> [1] 7065   16
>>
>>> group
>>>
>>  [1] "isowt" "isowt" "isowt" "isowt" "rlp"   "rlp"   "rlp"   "rlp"   "ssr"
>> [10] "ssr"   "ssr"   "ssr"   "xrlp"  "xrlp"  "xrlp"  "xrlp"
>>
>>  cds<- newCountDataSet( c, group)
>>> cds<- estimateSizeFactors( cds )
>>> cds<- estimateVarianceFunctions( cds )
>>>
>> Error: attempt to apply non-function
>>
>>> sessionInfo()
>>>
>> R version 2.13.0 (2011-04-13)
>> Platform: x86_64-unknown-linux-gnu (64-bit)
>>
>> locale:
>>  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
>>  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
>>  [5] LC_MONETARY=C              LC_MESSAGES=en_US.UTF-8
>>  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
>>  [9] LC_ADDRESS=C               LC_TELEPHONE=C
>> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
>>
>> attached base packages:
>> [1] tools     stats     graphics  grDevices utils     datasets  methods
>> [8] base
>>
>> other attached packages:
>>  [1] DESeq_1.4.0           locfit_1.5-6          lattice_0.19-23
>>  [4] akima_0.5-4           org.Sc.sgd.db_2.5.0   org.EcK12.eg.db_2.5.0
>>  [7] RSQLite_0.9-4         DBI_0.2-5             genefilter_1.34.0
>> [10] annotate_1.30.0       AnnotationDbi_1.14.1  rlecuyer_0.3-1
>> [13] snow_0.3-5            qpgraph_1.8.0         multicore_0.1-5
>> [16] Biobase_2.12.1        graph_1.30.0          igraph_0.5.5-2
>>
>> loaded via a namespace (and not attached):
>> [1] geneplotter_1.30.0 grid_2.13.0        Matrix_0.999375-50
>> RColorBrewer_1.0-2
>> [5] splines_2.13.0     survival_2.36-5    tcltk_2.13.0       xtable_1.5-6
>>
>>
>>
>>
>>
>>
>> _______________________________________________
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>>
>
>
> --
>
>
> Wolfgang Huber
> EMBL
> http://www.embl.de/research/units/genome_biology/huber
>
> _______________________________________________
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>



-- 
João Moura

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