Hi, Lana.

I would think that would make a difference since what you want to finally be
using are the counts of "molecules".

Sean


On Wed, May 18, 2011 at 1:45 PM, Lana Schaffer <schaffer@scripps.edu> wrote:

> Hi,
> I used the raw counts which are a coverage for each base within feature.
> Does it make any significant difference to use this raw count rather than
> The read count ?
>
> Lana Schaffer
> Biostatistics, Informatics
> DNA Array Core Facility
> 858-784-2263
>
>
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