Dear all,
i am a beginner, i hope you can help me.
I aligned my reads file and now i have a BAM file.
Now i want to divide the genome in genes.
Is possible to do it?
If yes, how?
>From bam file is possible to extract a SNP for a particular gene?
Example:
I want something like:
gene x:
snp in base: 43, 120 45

gene y:
snp in base: 56, 78, 540
and so on..

>From these results, is possible to have a plot?

I hope that these questions are right and clear.
Thanks for the attention to all.

Regards,
            Vincenzo

-- 
Regards,
            Capece Vincenzo

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