Hi,
I need to state the reproducibility between sequence lanes for RNA-Seq.
I don't think that I can print out a normalized set of count data using TMM but
Just the normalization scale factors?  How can I print out the 75th percentile scaled
Values?  If I calculate this 75%-ile counts and then calculate the SD?
Would it be best to us the common dispersion values?

Lana Schaffer
Biostatistics, Informatics
DNA Array Core Facility
858-784-2263


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