Thank you Sean and Paul,

Actually I was looking for something to using in R without calling samtools.


Thanks,

On Tue, Apr 26, 2011 at 3:13 PM, Sean Davis <sdavis2@mail.nih.gov> wrote:

> On Tue, Apr 26, 2011 at 8:52 AM, João Moura <palerma@gmail.com> wrote:
> > Hello,
> >
> > Do you know any way of convertin SAM to BAM using bioconductor?
>
> Hi, Joao.
>
> Untested:
>
> system(sprintf("samtools view -bS %s > %s",samfilename,bamfilename))
>
> Sean
>



-- 
João Moura

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